Moist Pumpkin Cupcakes with Filling Surprise Inside
Get ready to fall head over heels for these incredibly moist and fluffy pumpkin cupcakes with filling! These autumn-inspired treats combine the warm spices of fall with a surprise creamy center that will make your taste buds dance with joy. Perfect for busy weeknight desserts, these cupcakes take just 30 minutes from start to finish…
Get ready to fall head over heels for these incredibly moist and fluffy pumpkin cupcakes with filling! These autumn-inspired treats combine the warm spices of fall with a surprise creamy center that will make your taste buds dance with joy.
Perfect for busy weeknight desserts, these cupcakes take just 30 minutes from start to finish and are so simple that even beginner bakers can master them effortlessly.
What is Pumpkin Cupcakes with Filling?
Ever wondered why we call them “cupcakes with filling”? It’s like a delightful surprise party in your mouth! These aren’t your ordinary cupcakes – they’re little pockets of autumn magic with a secret creamy center that oozes with every bite. As they say, “the way to a man’s heart is through his stomach,” and these filled cupcakes are definitely the express route! Ready to create some kitchen magic?

Why You’ll Love This Pumpkin Cupcakes with Filling
Incredibly Moist and Flavorful
The star of this recipe is the perfect blend of pumpkin puree and warm fall spices that create an incredibly moist texture. Each bite delivers rich cinnamon, nutmeg, and clove flavors that transport you straight to a cozy autumn afternoon.
Budget-Friendly Homemade Treats
Making these pumpkin cupcakes with filling at home costs a fraction of what you’d pay at fancy bakeries. With simple pantry ingredients, you can create 24 professional-quality cupcakes for under $8, making them perfect for large gatherings or meal prep.
Surprise Creamy Filling
The hidden cream cheese filling adds an unexpected burst of richness that elevates these cupcakes from ordinary to extraordinary. Unlike our popular chocolate chip muffins, these treats offer a sophisticated flavor profile that appeals to both kids and adults.
Ready to impress your family and friends? Let’s dive into making these show-stopping cupcakes that’ll have everyone asking for the recipe!
How to Make Pumpkin Cupcakes with Filling
Quick Overview
These pumpkin cupcakes with filling are surprisingly easy to make and incredibly satisfying. The combination of tender pumpkin cake with a rich cream cheese filling creates the perfect balance of flavors and textures.
Total Time: 35 minutes
- Prep Time: 15 minutes
- Bake Time: 18-20 minutes
- Cool Time: 5 minutes
- Servings: 24 cupcakes
Key Ingredients for Pumpkin Cupcakes with Filling
For the Cupcakes:
- 1¾ cups all-purpose flour
- 1 cup granulated sugar
- ½ cup brown sugar, packed
- 1 cup pumpkin puree
- ½ cup vegetable oil
- 2 large eggs
- 1½ teaspoons baking powder
- ½ teaspoon baking soda
- 1 teaspoon salt
- 1½ teaspoons ground cinnamon
- ½ teaspoon ground nutmeg
- ¼ teaspoon ground cloves
- ¼ teaspoon ground ginger
- ¾ cup buttermilk
For the Cream Cheese Filling:
- 8 oz cream cheese, softened
- ⅓ cup powdered sugar
- 1 large egg yolk
- 1 teaspoon vanilla extract

Step-by-Step Instructions
Prepare for Baking Preheat your oven to 375°F (190°C). Line two 12-cup muffin tins with paper liners or grease with butter. This prevents sticking and makes cleanup easier.
Make the Cream Cheese Filling In a medium bowl, beat the softened cream cheese until smooth and creamy. Add powdered sugar, egg yolk, and vanilla extract. Mix until well combined and set aside. The filling should be thick but spreadable.
Mix Dry Ingredients In a large bowl, whisk together flour, both sugars, baking powder, baking soda, salt, cinnamon, nutmeg, cloves, and ginger. Make sure all spices are evenly distributed for consistent flavor.
Combine Wet Ingredients In another bowl, whisk together pumpkin puree, vegetable oil, eggs, and buttermilk until smooth. The mixture should be well combined with no lumps.
Create the Batter Pour the wet ingredients into the dry ingredients. Gently fold together using a rubber spatula until just combined. Don’t overmix – a few lumps are okay and will result in more tender cupcakes.
Fill and Add Filling Fill each muffin cup about ⅓ full with batter. Add a teaspoon of cream cheese filling to the center of each cupcake. Top with remaining batter, filling each cup about ¾ full.
Bake to Perfection Bake for 18-20 minutes, or until a toothpick inserted into the cake part (not the filling) comes out with just a few moist crumbs. The tops should spring back when lightly touched.
Cool and Enjoy Allow cupcakes to cool in the pan for 5 minutes before transferring to a wire rack. This prevents them from falling apart while still warm.
What to Serve Pumpkin Cupcakes with Filling With
These versatile cupcakes pair beautifully with warm apple cider or spiced chai tea for the ultimate fall experience. For a more indulgent treat, serve alongside vanilla ice cream or freshly whipped cream with a dash of cinnamon.
Consider creating a dessert spread with caramel sauce for drizzling, chopped pecans for crunch, or even a dollop of maple butter. They’re also perfect for autumn gatherings, Halloween parties, or Thanksgiving dessert tables.
Top Tips for Perfecting Pumpkin Cupcakes with Filling
Temperature Matters
Ensure your cream cheese is properly softened at room temperature for smooth filling. Cold cream cheese will create lumps that won’t disappear during baking.
Don’t Overfill
Fill cupcake liners only ¾ full to prevent overflow during baking. The filling will expand slightly, so less is more.
Check for Doneness Carefully
Test doneness by inserting a toothpick into the cake portion, not the filling. The filling will always be soft, so focus on the surrounding cake.
Ingredient Substitutions
Replace buttermilk with regular milk plus 1 tablespoon lemon juice if needed. Greek yogurt can substitute for some of the oil for lighter cupcakes.
Storage Success
Store completely cooled cupcakes in the refrigerator due to the cream cheese filling. Bring to room temperature before serving for best flavor.

Storing and Reheating Tips
Refrigerator Storage: Store these pumpkin cupcakes with filling in an airtight container in the refrigerator for up to 5 days. The cream cheese filling requires refrigeration for food safety.
Freezing Instructions: Wrap individual cupcakes tightly in plastic wrap, then place in a freezer bag. They’ll keep for up to 3 months. Thaw overnight in the refrigerator before serving.
Serving Temperature: For best flavor, remove from refrigerator 15-20 minutes before serving. The cream cheese filling tastes best at room temperature.
Reheating: If desired warm, microwave for 10-15 seconds. Be careful not to overheat as the filling can become too hot.
Frequently Asked Questions
Can I make these cupcakes ahead of time?
Yes! These cupcakes actually taste better after sitting overnight. The flavors meld together beautifully. Store covered in the refrigerator and bring to room temperature before serving.
What if I don’t have buttermilk?
Simply mix ¾ cup regular milk with 1 tablespoon white vinegar or lemon juice. Let sit for 5 minutes before using. This creates the perfect buttermilk substitute.
Can I use fresh pumpkin instead of canned?
Absolutely! Roast and puree fresh pumpkin, but make sure to drain excess moisture. Canned pumpkin puree is more consistent and convenient for baking.
How do I prevent the filling from sinking?
Make sure your batter isn’t too thin and don’t overfill the cups. The filling should be thick enough to hold its position during baking.
Can I double this recipe?
Yes! This recipe doubles beautifully. You’ll need four 12-cup muffin tins or bake in batches. Baking time remains the same.
What’s the best way to get the filling in the center?
Use a small spoon or squeeze bottle for precision. Make a small well in the batter before adding filling for best results.
Nutrition Information
Nutrient | Per Cupcake |
---|---|
Calories | 185 |
Total Fat | 7g |
Saturated Fat | 3g |
Cholesterol | 35mg |
Sodium | 220mg |
Total Carbs | 28g |
Dietary Fiber | 1g |
Sugars | 18g |
Protein | 4g |
Vitamin A | 15% DV |
Iron | 6% DV |
Nutritional values are approximate and may vary based on specific ingredients used.
Additional Helpful Tips for Success
Ingredient Quality: Use high-quality pumpkin puree (not pumpkin pie filling) for best results. Libby’s is a trusted brand that provides consistent texture and flavor.
Spice Alternatives: Create your own pumpkin pie spice blend by mixing 3 teaspoons cinnamon, 1 teaspoon ginger, ½ teaspoon nutmeg, and ¼ teaspoon cloves.
Texture Testing: The perfect cupcake should spring back when lightly touched. Overbaking results in dry cupcakes, while underbaking creates gummy texture.
Filling Variations: Try maple cream filling by adding 2 tablespoons maple syrup to the cream cheese mixture, or chocolate filling using ¼ cup mini chocolate chips.
Frosting Ideas: These cupcakes are delicious plain, but cream cheese frosting, maple buttercream, or cinnamon buttercream make excellent toppings.
Gift Packaging: These cupcakes make wonderful gifts. Package in clear containers with autumn ribbons for beautiful presentation.
Dietary Modifications: Substitute gluten-free flour blend for wheat-sensitive guests. The recipe works well with 1:1 substitution ratios.
These pumpkin cupcakes with filling represent everything wonderful about fall baking – they’re comforting, delicious, and bring people together. The surprise filling makes each bite special, while the moist pumpkin base provides the perfect canvas for warm autumn spices. Whether you’re baking for a crowd or just treating your family, these cupcakes deliver bakery-quality results with home kitchen simplicity.
Remember, the best recipes are meant to be shared, so don’t forget to pass this along to your fellow baking enthusiasts. Happy baking, and enjoy every delicious bite of these incredible pumpkin cupcakes with filling!